Additional file 2 of Integrating genome-wide association study with transcriptomic data to predict candidate genes influencing Brassica napus root and biomass-related traits under low phosphorus conditions

Additional file 2: Table S1. List of significant and suggestive SNPs for the investigated traits under LP-stress in the association panel. Table S2. Summary of read numbers and mapped reads from the RNA-Seq. Table S3. Information of DEGs (HP1/LP1-specific, HP1CK/LP1CK-specific, HP1/LP1/HP1CK/LP1CK-common, HP2/LP2-specific, HP2CK/LP2CK-specific, HP2/LP2/HP2CK/LP2CK-common). Table S4. Gene Ontology (GO) analysis for HP1/LP1-specific, HP1CK/LP1CK-specific, HP1/LP1/HP1CK/LP1CK-common, HP2/LP2-specific, HP2CK/LP2CK-specific and HP2/LP2/HP2CK/LP2CK-common, respectively. Table S5. List of significant GO terms in the MEbrown module. Table S6. List of significant KEGG pathways in the MEbrown module. Table S7. List of potential candidate genes within 300 kb upstream and downstream of the peak SNP in 11 QTL clusters for investigated traits under the LP stress. Table S8. Primers for qRT-PCR used in this study.