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MD simulation of HpTonB(30-285) in 40mM NaCl with Amber ff03ws force field

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Zenodo2020-08-01 更新2026-05-25 收录
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MD simulation of periplasmic part of TonB protein from <em>Helicobacter Pylori</em> HpTonB(30-285) with Amber ff03ws force field with 40 mM NaCl. Trajectory contains the last 1000ns of the simulation. nojump_nowater.xtc (10 ps saving frequency), md_noSOL.tpr, and confENDprot.gro contain only protein. micro_40mMNaClskip.xtc (100 ps saving frequency), md.tpr and confEND.gro contain also solvent. Force field parameters for proteins and counterions are dowloaded from https://github.com/bestlab/force_fields, for NaCl from https://bitbucket.org/hseara/ions

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Zenodo
创建时间:
2020-04-18
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