five

Brassica napus cultivar:Westar Raw sequence reads

收藏
NIAID Data Ecosystem2026-05-02 收录
下载链接:
https://www.ncbi.nlm.nih.gov/sra/SRP520858
下载链接
链接失效反馈
官方服务:
资源简介:
Canola (Brassica napus L.) is a commercially important oilseed crop worldwide. However, several devastating diseases such as clubroot, sclerotinia stem rot, and blackleg threatens the canola industry. The use of resistant germplasm is the best strategy to stop pathogen spreading and the economic loses linked to those diseases. To date, most resistance genes encode intracellular nucleotide binding leucine-rich repeat (NLR) immune receptor proteins (Barragan et al., 2021). Genome-wide identification of the NLR gene family in B. napus can help breeders and researchers accelerate the search for resistance genes. The B. napus cultivar "Westar" is a spring-type, low erucic acid cultivar that is widely used in genetic mapping and transformation studies. It also serves as a universal susceptible host standard for studying canola disease resistance to pathogens. The genome of "Westar" was released in 2020 and is predicted to carry 97,514 annotated genes (Song et al., 2020). Scanning those 97,514 genes for the presence of NLR-associated domains revealed a significantly lower number of NLRs compared to other annotated B. napus genomes (Alamery et al., 2018; Chen et al., 2021). This made us wonder if the "Westar" canola genome was properly annotated. In this study, we produced the first canola NLRome using the "Westar" genome and resistance gene enrichment sequencing (RenSeq) approach. This SRA repository contains the Illumina raw reads for the RenSeq experiment. The availability of the high-quality "Westar" NLRome is not only a significant advancement in understanding canola genetics but also offers practical applications for breeding programs aimed at improving disease resistance.
创建时间:
2024-07-18
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作