ALE reconciliation files

Reconciliation of gene families for the 24 species genomic datasets<br>ml_reconciliations.tar.gz - ALE Maximum Likelihood reconciliations of gene families<br>Trees.tar.xz - ML tree files for all orthogroups<br>ALE_objects.tar.gz - ALE objects generated from tree files<br>alternative_root_trees.tar.gz - Alternative topologies used to test the likelihood of different root positions<br>dated_genome_tree.tre - dated species phylogeny against which gene trees were reconciled<br>alternartive_root_trees.tar.gz - alternative root positions tested using ALE<br>genome_alignment.phy - concatenated sequence alignment used to infer unrooted topology and divergence times<br>genome_set_input.txt - treefile with fossil calibration information for divergence time estimation<br>genome_dated_posterior.tre - treefile containing divergence times of genome-only phylogeny <br>genome_dated_posterior.txt - parameter output of divergence time analysis<br>in.BV - estimated branch lengths and Hessian matrix for divergence time analysis<br>WEREWOLF_loss.newick.txt - gene family phylogeny for WEREWOLF<br>WOX4_loss.newick.txt - gene family phylogeny for WOX4<br>STM_loss.newick.txt - gene family phylogeny for STM<br>