Data from: Genes mirror geography in Daphnia magna

D_magna_RADseq.vcfPolymorphism data derived from 24 Daphnia magna clones, generated using the GATK v.3 pipeline.variant_calling.txtDescription of the GATK pipeline used for generating .vcf file for 24 D. magna individuals.smartpca_run.txtDescriptions of the creation and commands to use SmartPCA to generate PCA eigenvectors and eigenvalues.Procrustes_test.txtR commands to run Procrustes rotation and significance test.relatedness_analysis.txtScripts for using VCFtools and R to assess relationship between pair-wise relatedness and distance.Geographic_distance_matrix.txtPair-wise genetic distance between sampled clones, in kilometers.Pairwise_relatedness_full_dataset.txtEstimates of pairwise relatedness derived from a full dataset of all clones, using VCFtools.Pairwise_relatedness_full_MNremoved.txtEstimates of pairwise relatedness derived from a reduced dataset of clones, with the Mongolian clone removed, using VCFtools.Pairwise_relatedness_full_MNandILremoved.txtEstimates of pairwise relatedness derived from a reduced dataset of clones, with the Mongolian and Israel clone removed, using VCFtools.