Article - MPS-Sampling

The data about the article of MPS-Sampling.MPS-Samping: data of the analysis from MPS-Sampling.There are two directories, one for GTDB and one for RiboDB.inputgenome_index.csvoutput4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X: there is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.MPS_links.csv: A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).MPS_representatives.csv: A file with one column, contain the MPS-representatives chosen by MPS-Sampling.phylogeny: data about the phylogenetic inference.There are four datasets: Bacillaceae, Bacterial backbone, Enterobacteriaceae and Lactobacillaceae. For each dataset, there are two files:concat_cleaned.fst: the supermatrix used for the phylogenetic inference.FastTree_iTOL.nw: the inferred phylogeny, as it was used on iTOL.