EntF*-D11
收藏DataCite Commons2022-08-15 更新2025-04-17 收录
下载链接：
https://uvaauas.figshare.com/articles/dataset/EntF_-D11/20485395
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资源简介：
molecular dynamics simulation of the EntF* peptide, residue 11 in D form -starting coordinates posre.gro: energy minimized and water+ions equilibrated around peptide -topology topol.top: force field AMBER99SB-ILDB, TIP3P water, protonation states at pH = 3 (E,K protonated), [NaCl] = 25 mM, disulfide bond generated between residues 14 and 6 -md settings md.mdp time step 2 fs, temperature = 298 K, pressure = 1 bar -1 microsecond trajectory dry.xtc, dry.groframe rate 10 ps, water and ions removed, box centered on peptide -analysis files: radius of gyration, solvent accessible surface area (hydrophilic (backbone + hydrophilic side chains), hydrophobic (hydrophobic side chains)) <br>
提供机构：
University of Amsterdam / Amsterdam University of Applied Sciences
创建时间：
2022-08-13
