Assembly and annotation for great gerbil
收藏Figshare2020-01-30 更新2026-04-08 收录
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Approximantely 86x coverage of Illumina paired end reads were assembled with ALLPATHS-LG resulting in a highly contiguous scaffold assembly. <br>An iterative automatic annotation with MAKER2 using a mouse cDNA set (Ensembl) and proteins from Uniprot/SwissProt resulted in 70,974 predicted gene models. InterProScan was run on the predicted predicted proteins and gene names were allocated based on match with proteins in UniProt/SwissProt. We filtered this set based on Annotation Edit Distance (AED) using the deafult filtering parameter, creating a file set containing all genes with AED less than 1 (AED<1). This resulted in 22,393 gene models.<br>
创建时间：
2020-01-30
