TPM quantification (StringTie) of long-read isoforms in TCGA breast tumors and GTEx
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下载链接：
https://zenodo.org/record/6391289
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资源简介：
StringTie was applied to quantify the expression of long-read isoforms sequenced in TCGA and GTEx samples.
Inputs:
RNA-seq samples (bam files) from breast cancer samples from TCGA (tumors) and GTEx tissues (healthy controls).
GTF: full-length isoforms sequenced using PacBio long-read sequencing in breast tumors. See A comprehensive long-read isoform analysis platform and sequencing resource for breast cancer.
Output: tab-delimited files with TPM values for isoforms parsed from StringTie results.
More details: A comprehensive long-read isoform analysis platform and sequencing resource for breast cancer
创建时间：
2022-03-29
