Raw metagenomic co-assemblies
收藏DataCite Commons2020-08-30 更新2024-07-27 收录
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https://figshare.com/articles/Raw_metagenomic_co-assemblies/6016220/1
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Co-assemblies were done using MetaSpades v3.11.0, and scaffolds were renamed using anvi'o v.4.<br>PHANTASTIC_ICE: ice samples from the Antarctic peninsula in blooming conditions (Summer 2014-2015)<br>PHANTASTIC_RSP: surface water samples from the Ross Sea Polynya in blooming conditions (Summer 2013-2014)<br>PHANTASTIC_AAC: surface water samples from the antarctic circumpolar current between the RSP and Tasmania in blooming conditions (Summer 2013-2014)<br><br>My 2 cents: use the "1000nt" FASTA files to explore genes and functions, and the smaller "2500nt" FASTA files if only interested in genome-resolved metagenomics (e.g., to characterize population genomes). The later was already done using anvi'o v.4 (recovery of 73 MAGs, see second item in the same project). <br>
提供机构：
figshare
创建时间：
2018-03-26
