BioMog Modified Predefined Biomass for S. oneidensis using Growth Phenotype and Experimentally Measured Biomass.

While BioMog is now able to capture amino acid essentiality, it will still propose the removal of certain metabolites from the predefined biomass equation based on the present model structure and results from the growth phenotype experiments. These removals may not indicate that these metabolites are non-essential but may instead indicate an experimental or network structural issue. Abbreviations match those in Table 1 and 2 with the addition of protein_son_aerobic which represents an average protein macromolecule.