Glycopeptide assignments at JR-FL Env sequon positions in various formats.

Related to Fig 5. Heat maps are shown based on glycopeptide analysis of JR-FL VLP or gp120 monomer samples generated from two analyses of separate samples dated 11-11-19 and 4-24-21. To calibrate the extent of glycan maturation, each glycan type was assigned a numerical code from 1 to 19. Each number was multiplied by its percentage at each sequon to determine the mean glycan number (maturation state). These scores were used to generate the models in S5 Fig. Also shown are percentages of core glycan and sequon skipping. Differences in glycan maturation at each site between pairs of samples were calculated by subtracting glycan scores of one sample (usually the parent) from the scores of the other. These changes in glycan maturation were used to generate the models in S6 Fig. (XLSX)