Repeatmasker Table Custom Part 2
收藏Figshare2022-05-31 更新2026-04-08 收录
下载链接：
https://figshare.com/articles/dataset/Repeatmasker_Table_Custom_Part_2/19422119/1
下载链接
链接失效反馈官方服务：
资源简介：
We annotated repeats in assemblies through two rounds of annotation with RepeatMasker4.1.0 (Smit et al. 2020), the first round used custom repeat libraries generated by RepeatModeler2 for each respective assembly and with search engine “ncbi” and option -xsmall. We then converted the softmasked assembly resulting from the first RepeatMasker round to a hardmasked assembly using the lc2n.py script (https://github.com/PdomGenomeProject/repeat-masking), and re-ran RepeatMasker on the hard-masked assembly with RepeatMasker’s internal arthropod repeat library and species “Arthropoda”. We then merged RepeatMasker output tables from both runs to summarize the abundance of RE categories.<br><br><br><i>Authors: John S. Sproul, Scott Hotaling, Jacqueline Heckenhauer, Ashlyn Powell, Amanda M. Larracuente, Joanna L. Kelley, Steffen U. Pauls, and Paul B. Frandsen</i>
提供机构：
Sproul, John; Hotaling, Scott; Frandsen, Paul; Heckenhauer, Jacqueline
创建时间：
2022-05-31
