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Script used for dating phylogeny using cal3.
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2016-01-01
相关数据集
Comparison of divergence times from fossils with those estimated from molecular data and four calibration points for the sea urchin data.
For k-medoids (k-med), the optimal number of local clock is at k* = 3; the minimum sum of squared distance (SSD) is at k = 12.Notes�CFrom Smith et al. (2006): Fig. 5 (?) and Table 2 (?). �� Na?ve appr
Figshare2015-12-02 更新70
Highest posterior distribution interval and time (shown in AC years) to the most common recent ancestor (MRCA) from the five Costa Rican lineages.
Highest posterior distribution interval and time (shown in AC years) to the most common recent ancestor (MRCA) from the five Costa Rican lineages.
Figshare2020-04-14 更新50
Supp. Fig. 7 analysis ii
Analysis (ii). Plots are created from a 20 million generation BEAST analysis performed both with data and with an empty alignment. Plots compare the posterior distribution from an empty alighment (red
Dryad2015-01-01 更新30
expert_vs_estimated_node_ages
Linear regressions showing the correlation between the expert tree and estimated node ages, for nodes shared between the expert tree and estimated trees. Caveats for these regressions are discussed in
DataONE2016-08-03 更新70
Table S7 from A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans.
Formatted list of node calibration priors.
NIAID Data Ecosystem40
