Spleen_R_commands_dryad

This file contains the R commands that were used to run DESeq for the differential expression analysis described in this paper. The program DESeq was introduced in the following paper: Simon Anders and Wolfgang Huber. Differential expression analysis for sequence count data. Genome Biology, 11:R106, 2010. The commands and information about the function of these commands largely derive from the manual and documentation of this program written by Simon Anders that is available through the bioconductor page for DESeq.