AdditionalFile9.xlsx

This file is related to the study: "The sugarcane and sorghum kinomes: insights into evolutionary expansion and diversification", which describes the catalog of kinase gene family in Saccharum spontaneum and Sorghum bicolor, providing a reservoir of molecular features and expression patterns based on RNA-Seq and co-expression networks.<br><b>Additional file 9</b><b>Table S1.</b> Organization of sorghum RNA-Seq experiments.<b>Table S2.</b> Organization of sugarcane RNA-Seq experiments.<b>Table S3.</b> Kinase domain annotation of the 1,210 sorghum protein kinases.<b>Table S4.</b> Kinase domain annotation of the 2,919 sugarcane protein kinases.<b>Table S5.</b> Subfamily kinase classification of the sorghum 1,210 kinases based on alignment on HMMER and confirmed by phylogeny.<b>Table S6.</b> Subfamily kinase classification of the sugarcane 2,919 kinases based on alignment on HMMER and confirmed by phylogeny.<b>Table S7.</b> Sorghum and sugarcane kinase subfamily quantifications.<b>Table S8.</b> Sorghum kinase distribution across chromosomes.<b>Table S9.</b> Sugarcane kinase distribution across chromosomes and alleles.<b>Table S10.</b> Localization, intron quantity and possible alternative splicing events of the 1,210 sorghum kinases.<b>Table S11.</b> Localization and intron quantity of the 2,919 sugarcane kinases.<b>Table S12.</b> Domain annotation of the 1,210 sorghum protein kinases.<b>Table S13.</b> Domain organization of the 1,210 sorghum protein kinases.<b>Table S14.</b> Sorghum kinase domain organization for proteins with multiple kinase domains.<b>Table S15.</b> Domain annotation of the 2,919 sugarcane protein kinases.<b>Table S16.</b> Domain organization of the 2,919 sugarcane protein kinases.<b>Table S17.</b> Sugarcane kinase domain organization for proteins with multiple kinase domains.<b>Table S18.</b> Gene Ontology (GO) annotations for the 1,210 sorghum kinases.<b>Table S19.</b> Gene Ontology (GO) annotations for the 2,919 sugarcane kinases.<b>Table S20.</b> Compositional analyses of the 1,210 sorghum kinases.<b>Table S21.</b> Compositional analyses of the 2,919 sugarcane kinases.<b>Table S22.</b> Characteristics of sorghum kinase subfamilies.<b>Table S23.</b> Characteristics of sugarcane kinase subfamilies.<b>Table S24.</b> Presence of domains across sorghum kinase subfamilies.<b>Table S25.</b> Presence of domains across sugarcane kinase subfamilies.<b>Table S26.</b> Duplication origin of the 1,210 sorghum kinases.<b>Table S27.</b> Duplication origin of the 2,919 sugarcane kinases.<b>Table S28.</b> Collinearity events and Ka/Ks values of sorghum protein kinases.<b>Table S29.</b> Collinearity events and Ka/Ks values of sugarcane protein kinases.<br>