Additional file 4: Performance comparison of KDeep against other RBP-site predictors on the RBP-24 dataset. The evaluation includes DeepRKE-, DeepRKE+, GraphProt, deepnet-rbp, DeepBind, mmCNN, and iDe

DataCite Commons2024-08-15 更新40

A unified model for the function of YTHDF proteins in the regulation of m6A-modified mRNA

m6A甲基化调控

YTHDF蛋白功能

N6-methyladenosine (m6A) is the most abundant mRNA nucleotide modification and regulates critical aspects of cellular physiology and differentiation. m6A is thought to mediate its effects through a co

NIAID Data Ecosystem30

Global identification of RsmA/N binding sites in Pseudomonas aeruginosa by in vivo UV CLIP-seq

RNA结合蛋白

基因表达调控

Pseudomonas aeruginosa harbours two redundant RNA-binding proteins RsmA/RsmN (RsmA/N), which play a critical role in balancing acute and chronic infections. However, in vivo binding site

DataCite Commons2022-08-03 更新60

Enhanced CLIP-Seq (eCLIP-Seq) of PXR in different cell types

RNA结合蛋白

PXR转录后调控

eCLIP-seq identified PXR as an RNA-binding protein to interact with mature mRNA while at its âinactivatedâ form in cell cytoplasm. Overall design: Enhanced UV crosslinking and immunoprecipitation

NIAID Data Ecosystem30

FMRP iCLIP and miCLIP in Mettl3 knockout MEFs

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