Additional file 1: of The genomic impact of historical hybridization with massive mitochondrial DNA introgression

Table S1. Basic information of specimens sequenced in this study. Table S2. ELAI’s Power for inferring introgression according to our simulations of artificial introgression. Table S3. Demographic inferences from IBS tracts. Table S4. List of nuclear genes overlapping regions with outlier introgression frequencies. Table S5. Gene Ontology functional enrichment analyses of genes overlapping regions with outlier frequencies of introgression. Table S6. Summary of GO functional categories significantly enriched in the set of genes with outlier introgression frequencies. Table S7. Nonsynonymous mutations detected within 123 high frequency introgression genes and their potential functional impact inferred using SIFT. Table S8. List of mitonuc genes with outlier frequencies of introgression. Table S9. List of mitonuc genes with geographic patterns similar to that of mtDNA. Table S10. Nonsynonymous mutations detected within mitonuc gene candidates to have co-introgressed with mitochondrial. Table S11. Classification of chromosomes according to centromere position. (XLSX 58 kb)