Additional file 13 of Methylation in MAD1L1 is associated with the severity of suicide attempt and phenotypes of depression

Additional file 13: Table S5. 5.1 Genetic variants used for mQTL analysis. The column headers correspond to the IMPUTE2 output. 5.2 The mQTL analysis in the adolescent screening sample. The statistics were calculated in the package MatrixEQTL. P values were adjusted with false discovery rate method. 5.3 Statistics of the candidate CpG sites in screening. Depr. SNP placement column indicates a relative placement of a MAD1L1 depression-related SNP in the CpG-specific mQTL table (sorted by FDR). Depr. SNP name column indicates the name of the MAD1L1 depression-related SNP in the column with placement. Top 10 Variants column shows the Top 10 variants associated with a CpG in the CpG-specific mQTL table (sorted by FDR). LD with depr.SNPs column shows if the SNP in the Top 10 list is in LD with at least one MAD1L1 depression-related SNP. 5.4 Statistics of the MAD1L1 depression-related SNPs in screening. The Top CpG placement column shows a relative placement of a candidate CpG site in the SNP-specific mQTL table (sorted by FDR). The CpG name column shows the name of the CpG associated with its placement in the previous column. 5.5 The mQTL analysis in the adolescent recall sample. The statistics were calculated in the package MatrixEQTL. P values were adjusted with the false discovery rate method. 5.6 Statistics of the candidate CpG sites in the recall. Depr. SNP placement column indicates a relative placement of a MAD1L1 depression-related SNP in the CpG-specific mQTL table (sorted by FDR). Depr. SNP name column indicates the name of the MAD1L1 depression-related SNP in the column with placement. Top 10 Variants column shows the Top 10 variants associated with a CpG in the CpG-specific mQTL table (sorted by FDR). LD with depr.SNPs column shows if the SNP in the Top 10 list is in LD with at least one MAD1L1 depression-related SNP. 5.7 Statistics of the MAD1L1 depression-related SNPs in the recall. The Top CpG placement column shows a relative placement of a candidate CpG site in the SNP-specific mQTL table (sorted by FDR). The CpG name column shows the name of the CpG associated with its placement in the previous column.