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Data for ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

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https://figshare.com/articles/dataset/Data_for_ClonalFrameML_Efficient_Inference_of_Recombination_in_Whole_Bacterial_Genomes/19626912
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Contains the following data used as an example (Figure 1) in the paper: Saureus.fasta multiple sequence alignment of S. aureus genomes, variable sites only Saureus.phyML.newick phylogeny relating the clonal frame of the S. aureus genomes Saureus.non-core-sites.txt list of variably present sites to exclude from analysis core-sites.txt list of core sites present in all genomes cfml_results_2.R R code for generating figures
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2022-04-21
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