Transcript and genome assemblies of Atlantic cod

Described here: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3448-xNEWB454: An assembly based on 454 sequencing reads and sequenced BAC-ends. Assembled with Newbler 3.0. CA454ILM: An assembly based on Illuminaand 454sequencing reads. Assembled with CeleraAssembler. CA454PB: An assembly based on Illumina,454 andPacBio sequencing reads. Assembled withCelera Assembler. ALPILM:An assembly based on Illumina reads. Assembled with ALLPATHS-LG. gadMor2: An assembly reconciliation of NEWB454,ALPILM,CA454PB, CA454ILM put into linkage groups. trinity_cod_rna: A Trinity assembly of IlluminaRNA reads from 10.1016/j.redox.2015.06.003. newbler_cod_rna: A Newbler assembly of 454 and Sanger reads from 10.1038/nature10342 and Sanger reads from 10.1186/1471-2164-13-443. isoseq_cod_rna:A IsoSeq clustering of PacBio RNA reads.te_comprehensive_cod_replib: The repeat library used for annotation TEs.repeatmodeler_cod_replib: The repeat library used for annotation. gadMor2_predicted_*_filtered: The predicted proteins/transcripts, filtered at less than 0.5 AED.gadMor2_predicted_transcripts_all: All predicted proteins/transcripts.gadMor2_annotation_filtered_only_gene_models: Only the gene models from the annotation, genes with less than 0.5 AED.gadMor2_annotation_filtered: Only genes with less 0.5 AED, plus everything else (exonerate, blast, repeats etc).gadMor2_annotation_complete: Everything MAKER outputs.