Data_used_in_mosquito_study

All datasets used for the, annotations, differential expression analysis, enrichment analysis, and DNA binding and lncRNAs identification.The DE directory contains:count matrices computed using featureCounts of the Subread R package and used for the differential expression analysis for the , WT vs. epox -/- mutant (featureCounts_counts_matrix_WTvsepox.txt) and WT across timepoints comparisons (featureCounts_counts_matrix_WTacrosstimepoints.txt)complete tables with the DE results for the WT and epox -/- mutant (DE_lgFC2_FDR0.01_WTvsepox.xlsx), WT across timepoints (DE_lgFC2_FDR0.01_WTacrosstimepoints.xlsx) comparisonsEggNog annotations used for the enrichment analysis (MM_5wcdadnx.emapper.annotations.csv)full table with the outputs of the enrichment analysis for the clusters recovered by the k-means algorithm (KmeansEnrichmentGOterms.xlsx)The DNAbinding_lncRNAs directory contains:output of the search for the DNA binding proteins with the Zinc-finger domains using ZnF-Prot (ZnF-Prot.txt)output of the CPC2 analysis (result_cpc2_fruitfly.txt)output of the LncDC analysis (lncdc_AA_selftrained_withSSF.csv)output of the search for the motifs in the differentially expressed lncRNAs using MEME-suite (MEME-DEGs_out.txt)the list of lncRNAs that could serve as regulators of genes that mediate juvenile hormone action (lncRNAs_genes_of_intrests.xlsx)The summary of the search for DNA binding proteins, transcription factors and zinc finger domains (DBPs_TFs_DEGs_ZnFs.xlsx)The HPLC_MS_MS_Figure6 directory contains:Individual data values of ecdysteroids titers used for Figure 6 (Ecdysteroids_titers_sum.xlsx)The delay_genes_Additional_file_8 directory contains:Individual data values of delay genes used for Additional file 8 (delay_genes_data_used_for_Additional_figure_8.xlsx)The VMPs_Figure5_Additional_file_6 directory contains:Individual data values of VMPs used for Figure 5 and Additional file 6 (VMPs_data_used_for_Figure5_and_Additional_file6.xlsx)