Supplemental Material for Bapat et al., 2023

<strong>Figure S1.</strong> Dot plots representing self-alignment of a masked Ga1 genomic region in 5 representative groups. <strong>Figure S2.</strong> Dot plots representing pair-wise alignment of chromosome 4 of B73 with representative members of other groups. <strong>Figure S3. </strong>Phylogenetic tree of ZmGa1P-like sequences in B73. <strong>Figure S4.</strong> Tree showing ZmGa1P hits in teosinte genomes. <strong>Table S1.</strong> List of pangenome markers and their positions that define regions of variability around and including the <em>Ga1</em> locus region across different NAM genomes. <strong>Table S2.</strong> List of pangenome markers and their positions that have been used to define x and y coordinates of sequences in pairwise dotplots. <strong>Table S3.</strong> Summary of<em> ZmPme3</em> and <em>ZmGa1P</em> BLAST hits and their genomic positions in Tripsacum and Teosinte genomes. <strong>Table S4.</strong> List of Blast hits in Tripsacum and Teosinte genomes for<em> ZmGa1P</em> as query sequence. <strong>Table S5</strong>. List of Blast hits in Tripsacum and Teosinte genomes for <em>ZmPme3</em> as query sequence. <strong>Table S6.</strong> <em>ZmPme3</em> and <em>ZmGa1P</em> genomic sequence BLAST analysis results in genes and proteins with sequence similarity in several grass species