MOESM6 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

Additional file 6: Table S5. Non-Oriented Parent-Offspring duos inferred with less than 600 Mendelian Errors (ME), indicating the preferred name of the two individuals of the pair (Preferred Name Ind1, Preferred Name Ind2) and their MUNQ (MUNQ Ind1, MUNQ Ind2, the number of ME (# ME), MUNQ of supposed offspring (Supposed Offspring) and supposed parent (Supposed parent) in the pair when available with indication of the source of the supposed orientation (oriented using), presupposed parents of both individuals (Ind1_Parent1 from Literature, Ind1_Parent 2 from Literature, Ind2_Parent1 from Literature, Ind2_Parent 2 from Literature) and source of these documentation (Source_parents_ind1, Source_parents_ind2), documented dates of ind1 and ind2 as indicated in Additional file 1: Table S1, and indication of possibility of orientation according to date (Date consistency). The duos which were oriented based on documented parentage (ped-lit in column “oriented using”) are listed in the first 44 lines, and are sorted alphabetically according to the preferred name of the supposed offspring. The duos which were oriented based on documented dates of the two individuals are listed in the next 161 lines and are sorted from the oldest to the most recent supposed parent; next are listed the 43 duos which were oriented because one individual of the duos was supposed a child in a duo oriented according to previously documented parentage or dates; these are sorted from the oldest to the most recent supposed parent; next are listed two duos which were oriented in a second round. Next are listed 51 duos for which a date was listed for one individual only: this individual was then attributed to be Ind2 and all these duos are sorted from the oldest to the most recent Ind2. Next are listed seven duos for which a date was available for both individuals but was too imprecise or too old to enable orientation. The remaining 22 duos for which neither dates nor parentage documentation were found, are listed at the end; individuals that appeared most frequently in these duos were attributed to be Ind2 and all these duos are sorted alphabetically according to the preferred name of Ind2.