Result tables for a multi-cohort transcriptome analysis of pancreatic ductal adenocarcinoma

Gene-level result tables from a multi-cohort transcriptome analysis of pancreatic ductal adenocarcinoma (PDAC), generated with the scripts in the code archive (https://doi.org/10.5281/zenodo.23459618). Contents of pdac_results_tables_v3.zip (results/ folder):- Per-cohort limma tumor-versus-normal results for six microarray cohorts (GSE28735, GSE62452, GSE15471, GSE16515, GSE62165, GSE32676), with sample annotation and QC tables.- meta/: random-effects meta-analysis tables (five-cohort core signature and six-cohort extended analysis), robust DEGs, compartment assignment and its comparison with single-cell assignment, module assignments and overlap statistics, DepMap dependency classification and sensitivity analysis, candidate-gene evidence.- survival/: Cox and pooled survival results, including the refit with true standard errors.- sc/: single-cell tables for two atlases (GSE155698, GSE212966), including sample-level comparisons.- rnaseq/: TCGA-PAAD versus GTEx pancreas limma-voom results. Supplementary_Tables_S1-S9.xlsx and Supplementary_Table_S4_marker_sets.xlsx are the supplementary tables of the accompanying manuscript. Raw public data (GEO series matrices, platform files, TCGA, GTEx, DepMap) are not included and are available from the original sources.