Complement activation induces excessive T cell cytotoxicity in severe COVID-19. Georg et al
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http://doi.org/10.17632/9sw3trkv8p.3
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In addition to the Figures published in the original article and associated supplemental Figures, the attached files contain the following information:
Mendeley Data 1-4
• Members of the PA-COVID-19 Study group
• Mendeley Data 1: a reanalysis of a published scRNA-seq data set of bronchoalveolar lavage (BAL) samples from COVID-19 patients and patients with non-COVID-19 pneumonia (Wauters et al., 2021) to investigate T cells and their phenotypes from the lung .
• Mendeley Data 2: Gating strategy and represantative plots of Figure S1
• Mendeley Data 3: Gating strategy and represantative plots of Figure 5D
• Mendeley Data 4: Gating strategy Firgures 5F/G/H
Supplementary Tables 1-6
• Supplementary Table 1: Cohort details related to Figures 1-6.
• Supplementary Table 2: Gene lists for the signatures “Response to Type I Interferon” , “Defense Response to virus” and “Cytotoxicity” used for GSEA, related to Figure 2 and Figure S3.
• Supplementary Table 3: Antibody panel “MCFC cohort 2” , related to Figure S1 and STAR Methods
• Supplementary Table 4: Antibody panel “degranulation assays” , related to Figures 3C-E.
• Supplementary Table 5: Antibody panel for “C3a binding capacity” , related to Figure 5D.
• Supplementary Table 6: Antibody panel “SARS-CoV-2 reactivity” , related to Figure 3F.
Gene list Annotation for scRNA sequencing
此外,除原文及其关联补充图表之外,所附文件包含以下信息:
Mendeley 数据 1-4
• PA-COVID-19 研究组成员
• Mendeley 数据 1:对一篇已发表的 scRNA-seq 数据集的重新分析,该数据集来源于 COVID-19 患者和非 COVID-19 肺炎患者的支气管肺泡灌洗 (BAL) 样本(Wauters 等人,2021年),旨在探究肺部的 T 细胞及其表型。
• Mendeley 数据 2:图 S1 的门控策略及代表性图表
• Mendeley 数据 3:图 5D 的门控策略及代表性图表
• Mendeley 数据 4:图 5F/G/H 的门控策略图表
补充表格 1-6
• 补充表格 1:与图 1-6 相关的队列详细信息。
• 补充表格 2:用于 GSEA 的“对 I 型干扰素反应”、"防御病毒反应"和“细胞毒性”特征基因列表,与图 2 和图 S3 相关。
• 补充表格 3:“MCFC 队列 2”的抗体面板,与图 S1 和 STAR 方法相关。
• 补充表格 4:“脱颗粒实验”的抗体面板,与图 3C-E 相关。
• 补充表格 5:“C3a 结合能力”的抗体面板,与图 5D 相关。
• 补充表格 6:“SARS-CoV-2 反应性”的抗体面板,与图 3F 相关。
scRNA 测序的基因列表注释
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