Transcriptional response of A. thaliana Root and Shoot tissue to light stress and presence of microbial communities

We profiled the root and shoot transcriptomes of BFO-colonized (Bacteria, Fungi, Oomycetes) and germ free A. thaliana exposed to Low PAR (photoactive radiation, LP) and normal condition (NC) in the gnotobiotic FlowPot system five weeks post inoculation. Overall design: Combination of two different conditions were tested, a) absence/presnece of microbes and b) normal condition and low PAR condition. Respectively in plant Roots (n= 12 samples) and Shoots (n=12 samples)