Supporting Information

Supporting information for a research artile "A highly contiguous genome assembly of red perilla (<em>Perilla frutescens</em>) domesticated in Japan". <strong>Table S1.</strong> Statistics of the contigs generated by Hifiasm. <strong>Table S2.</strong> AGP file (scaffolds_FINAL.agp) generated by SALSA2 describing the contig assignment of each scaffold. <strong>Table S3.</strong> Length and the components of 20 pseudochromosomes. <strong>Table S4.</strong> Summary of the gene annotation of each of the three methods. <strong>Figure S1. </strong>Merqury assembly spectrum plots of haplotype 1 (hap1) and haplotype 2 (hap2). <strong>Figure S2. </strong>Dot-plot alignment between the draft scaffolds (indicated as “s”) (longest 25 scaffolds; scaffold_1–25) and reference PF40 genome assembly. Blue dots represent +/+ strand alignments and red dots represent +/- strand alignments. <strong>Figure S3. </strong>Hi-C contact map of the draft scaffolds (indicated as “s”) generated by SALSA2.