Supplemental Material for Smith et al., 2020

<b>Document S1: Detailed description of library preparation, RNA bait design, and targeted sequence capture methods.</b><b>Document S2: Map information, phenotypes, and genotypes used for QTL and sex locus mapping.</b><b>Table S1: The lake trout linkage map and sequences of mapped RAD loci.</b><b>Table S2: Centromere mapping intervals for each linkage group</b><b>Table S3: Candidate genes identified for significant QTL peaks.</b><b>Table S4: Estimated recombination rates for each linkage group</b><b>Figure S1: Alignments of lake trout linkage groups with Arctic char chromosomes. </b><b>Figure S2: Alignments of lake trout linkage groups with rainbow trout chromosomes. </b><b>Figure S3: Alignments of lake trout linkage groups with Atlantic salmon chromosomes. </b><b>Figure S4: Dot plot grid comparing the lake trout linkage map with the Arctic char genome assembly.</b><b>Figure S5: Dot plot grid comparing the lake trout linkage map with the rainbow trout genome assembly.</b><b>Figure S6: Dot plot grid comparing the lake trout linkage map with the Atlantic salmon genome assembly.</b><b>Figure S7: MapComp dot plot grid comparing the lake trout linkage map with the brook trout linkage map from Sutherland et al. (2016). </b><b>Figure S8: Centromere mapping using half tetrad analysis.</b><b>Figure S9: Boxplots of recombination rate estimated for each linkage group for males and females. </b><br>