Additional file 7 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 7: Table S3.Read annotation statistics for NOD mouse datasets from MetaPro, HUMAnN3, HUMAnN2, SAMSA2 compared with the gold standard. This table shows the number of reads in each NOD mouse sample each pipeline assigned to the 8 ASF bacteria: Clostridium ASF356, Clostridium ASF502, Eubacterium plexicaudatum, Firimicutes ASF500, Lactobacillus ASF360, Lactobacillus murinus, Mucisprillim schaedleri, and Parabacteroides ASF519.  Due to the similarity between P. ASF519, and P. goldsteinii, the pipelines will sometimes annotate to P. goldsteinii rather than to P.ASF519.  P. goldsteinii was also a dominant species found within the samples outside of the 8 ASF bacteria.  The expected results were produced by annotating the reads with a reference containing only the 8 ASF, using BWA.