Estimation of non-synonymous/synonymous rate ratio (ω) under different models by using CODEML in PAML [19].
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1ω-model: (Musa#ω0, Typha#ω0, (crown Poaceae #ω0) #ω0). Simple 2ω-model: (Musa#ω0, Typha#ω0, (crown Poaceae #ω1) #ω1). 3ω-model: (Musa#ω0, Typha#ω0, (crown Poaceae #ω2) #ω1). Reverted 2ω-model: (Musa#ω0, Typha#ω0, (crown Poaceae #ω0) #ω1). “Crown Poaceae” includes all Poaceae branches in our tree except for the common ancestral branch (stem Poaceae). The codon-substitution model with the F61 codon frequency was used. Minimum AIC (Reverted 2ω-model) is shown in bold italic.
创建时间：
2009-04-24
