Transcriptomic data: Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses

This study used a combined RNA-Seq and Tn-Seq approach to characterize the response of Enterohemmorhagic E. coli (EHEC) to metabolites from an in vitro culture of 33 human gut microbiota isolates. The dataset deposited here contains RNA-sequencing reads of EHEC cultured in media containing microbiota metabolites or control rich and minimal media, which was used to determine how pathogen gene expression changes in response to the gut microbiota.