Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach (Supplementary material)

This repository contains the supplementary data and genome assemblies generated in the frame of the study: "Exploring Chlamydia trachomatis global genomic diversity with a novel core-genome MLST (cgMLST) approach" by Lodhia et al. 2025. In this repository you will find: "Assemblies.zip" - In this folder there are the 327 assemblies generated by this study, including the the 57 newly sequenced isolates from Portugal. "Supplementary_files.zip" - In this folder there are all Supplementary files generated by this study and that served as source data for the main and supplementary figures. "Supplementary_figures.zip"* - In this folder there are all Supplementary figures generated by this study. *In this folder you will also find an interactive HTML version for the main Figure 3B, as well as for Supplementary Figure S6. Citation If you use this schema or the provided datasets in your work, please cite: Zohra Lodhia, Verónica Mixão, Joana Isidro, Rita Ferreira, Dora Cordeiro, Cristina Correia, Inês João, João Paulo Gomes, Maria José Borrego and Vítor Borges (2025) Advancing Chlamydia trachomatis genomic surveillance and research with a novel core-genome MLST (cgMLST) approach. Research Square. doi: 10.21203/rs.3.rs-7743240/v1 This repository Funding This work was funded by national funds through FCT - Foundation for Science and Technology, I.P., in the frame of Individual CEEC 2022.00851.CEECIND/CP1748/CT0001 (doi: 10.54499/2022.00851.CEECIND/CP1748/CT0001) and of the doctoral fellowship SFRH/BD/147446/2019 (doi: 10.54499/SFRH/BD/147446/2019), and by the European Union project “Sustainable use and integration of enhanced infrastructure into routine genome-based surveillance and outbreak investigation activities in Portugal” - GENEO [101113460] on behalf of the EU4H programme [EU4H-2022-DGA-MS-IBA-01-02].