Neurospora RIP mutation

# Neurospora RIP mutation Storage of code and files used in N.crassa RIP analysis ## Genome mutation calling Processing of fastq files into bams and vcfs. Filtering reliable mutations ## Methylation quantification Using Bismark to process the raw data and prodived methylation quantification results. ##sly1_mutation Code and files used in Sly1-1 mutations ## attached files Some files containing the information used in this analysis ### RLR_refseq_annotation.fas The sequences of the RLR segments used in the study. ### RLR_refseq_region.bed The annotation of the RLR_refseq in bed format ### Dup_window_category_w200_v6.0based.bed Annotating the duplication region with the four criterias in the study. In bed format.