Apr2024 reference datasets for Mitohelper
收藏Zenodo2025-03-14 更新2026-05-26 收录
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https://zenodo.org/doi/10.5281/zenodo.11040217
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资源简介：
Reference datasets (Apr 2024 update) for Mitohelper (https://github.com/aomlomics/mitohelper)
Mitohelper is a repository built to facilitate experimental design, alignment visualization, and reference sequence analysis in fish eDNA studies. Refer to our paper and Mitohelper's wiki for database construction pipeline.
I. Reference database files in tab-separated format, containing gene, taxonomy, and sequence information:
mitofish.all.Apr2024.tsv (877,543 records)
mitofish.12S.Apr2024.tsv (59,616 records)
mitofish.12S.Apr2024_NR.fasta (FASTA file of 12S rRNA gene records)
mitofish.COI.Apr2024.tsv (327,853 records)
II. De-replicated QIIME 2-compatible 12S/12S+16S+18S rRNA reference datasets:
12S-seqs-derep-uniq.qza
12S-tax-derep-uniq.qza
12S-16S-18S-seqs.qza
12S-16S-18S-tax.qza
If you use Mitohelper, please cite:Jean Lim, S, Thompson, LR. Mitohelper: A mitochondrial reference sequence analysis tool for fish eDNA studies. Environmental DNA. 2021; 00: 1– 10. https://doi.org/10.1002/edn3.187
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Zenodo创建时间：
2024-04-23
