The list of sequences obtained by the Tim17 protein family-specific HHsearch in Uniprot database of reference proteomes. The columns A to E - taxonomic affiliation, the column F- sequence ID, the colu
Additional file 17. 1_cp_cct_x_cp_ppb.pl. Perl script used to identify the protein families containing one copy in C. tepidum and multiple copies in P. phaeoclathratiforme from UniProt.
Generated by all vs. all blast of 34 eukaryote genomes, followed by mcl clustering, alignment of proteins in each cluster, and generation of HMMs from each alignment.
Data file S1. Phylogenetic trees in Newick format. In the order of appearance in the file: 1) maximum-likelihood tree computed with FastTree, 2) maximum-likelihood tree computed with RAxML, 3) neighbo
