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Genome structure mapping with high-resolution 3D genomics and deep learning (MicroC)

NIAID Data Ecosystem2026-05-02 收录

基因组结构

3D基因组学

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP585082 数据链接链接失效反馈

官方服务：

资源简介：

MicroC data from GM12878, HCT116 and K562 cells, used for training deep learning model Cleopatra.

应用场景：

创建时间：

2025-05-16

水稻基因功能

基因组结构

Wx gene encodes GBSSI, which catalyses both amylose and amylopectin synthesis in rice endosperm. A rice wx mutant 75KURwx4N1 line, was obtained by irradiation thermal neutron to non-waxy cultivar Nori

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Spinacia oleracea Raw sequence reads

基因组结构

基因组倒位分析

Hi-C data of Spinach; And raw reads of ONT was used for inversion analyses

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Organisation of the Strigamia maritima mitochondrial genome.

基因组结构

基因间隔分析

Intergenic nucleotides shown as gaps (positive values) or overlap (negative values) between consecutive genes. Organisation of the Strigamia maritima mitochondrial genome.

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Fig. S5C_DNA_AK2_ESC.zip

基因表达调控

基因组结构

3D DNA-FISH microscopy images related to Fig.S5C, Fig.S5D (Number of associated file: 7) Manuscript: Lleres, David; Moindrot, Benoit; Noordermeer, Daan; Feil, Robert (2019), “CTCF modulates all

DataCite Commons2020-08-26 更新70

Systematic Analysis of Head-to-Head Gene Organization: Evolutionary Conservation and Potential Biological Relevance

基因组结构

转录调控机制

Several “head-to-head” (or “bidirectional”) gene pairs have been studied in individual experiments, but genome-wide analysis of this gene organization, especially in terms of transcriptional correlati

NIAID Data Ecosystem40

Genome structure mapping with high-resolution 3D genomics and deep learning (MicroC)

资源简介：

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