Autocrine TGFß2 enforces a transcriptionally hybrid cell state in Ewing sarcoma

Sub-populations of cancer-associated fibroblast (CAF)-like tumor cells deposit extracellular matrix (ECM) proteins that support Ewing sarcoma (EwS) progression and metastasis. We previously showed a hallmark of CAF-like EwS cells is their hybrid transcriptional state wherein the driver fusion oncogene, EWS::FLI1, maintains activation of proliferative programs but loses capacity to repress mesenchymal genes. Here, we studied primary patient tumors and cell line models to identify molecular drivers of this hybrid state. Our data reveal that hybrid EwS cells are induced and maintained by a TGFß signaling positive feedback loop. Hybrid cells de-repress TGFBR2 and upregulate expression and secretion of TGFß2 to sustain pathway activation and ECM deposition. While TGFß ligands can potently induce growth arrest in cells of epithelial origin, we show that TGFß1 and TGFß2 have no impact on EwS proliferation but instead promote cell invasion. Thus, stroma and tumor-derived TGFß ligands induce and maintain hybrid EwS cells to promote metastatic phenotypes. Overall design: Poly(A)-capture RNA-seq was performed on RNA (purified using Qiagen RNeasy kit) from TC71, A673, CHLA10, and PDX305 cells treated with TGFß1 (10 ng/mL), TGFß2 (10 ng/mL), vactosertib (1uM), or vehicle controls for 24hrs. Paired end 150 bp sequencing was performed on a NovaSeq X Plus.