BIOL330 Project Data

The Data folder contains all data for this project.NGlyde_Phos.py contains the code for extracting glycosylation and phosphorylation positions from NetNGlyc and NetPhos.Glyc_Phos Alignment Mapping.ipynb contains a notebook with code for mapping unaligned PTM positions to aligned positions.UpdatedDotplots.R contains the code to generate the dot plots in Figures 18-21.The Spike folder contains all data for spike analysis, and the NSP3 folder contains all data for the NSP3 analysis.Both of these folders contain the FASTA files with sequences, MSA alignment (.fasta and .phy), reference table with data from the BLAST search, and a glycosylation/phosphorylation folder that contains similarity score tables, and all data pertaining to glycosylation/phosphorylation analysis (output of prediction websites, tables of predicted PTM sites, similarity score tables, tables of aligned PTM sites, and dot plots).