five

Data from: The grass was greener: repeated evolution of specialized morphologies and habitat shifts in ghost spiders following grassland expansion in South America

收藏
DataONE2018-04-11 更新2024-06-25 收录
下载链接:
https://search.dataone.org/view/null
下载链接
链接失效反馈
资源简介:
While grasslands, one of Earth’s major biomes, are known for their close evolutionary ties with ungulate grazers, these habitats are also paramount to the origins and diversification of other animals. Within the primarily South American spider subfamily Amaurobioidinae (Anyphaenidae), several species are found living in the continent’s grasslands, with some displaying putative morphological adaptations to dwelling unnoticed in the grass blades. Here, a dated molecular phylogeny provides the backbone for analyses revealing the ecological and morphological processes behind these spiders’ grassland adaptations. The multiple switches from Patagonian forests to open habitats coincide with the expansion of South America’s grasslands during the Miocene, while the specialized morphology of several grass-dwelling spiders originated at least three independent times and is best described as the result of different selective regimes operating on macroevolutionary timescales. Although grass-adapted lineages evolved towards different peaks in adaptive landscape, they all share one characteristic: an anterior narrowing of the prosoma allowing spiders to extend the first two pairs of legs, thus maintaining a slender resting posture in the grass blade. By combining phylogenetic, morphological, and biogeographic perspectives we disentangle multiple factors determining the evolution of a clade of terrestrial invertebrate predators alongside their biomes.
创建时间:
2018-04-11
用户留言
有没有相关的论文或文献参考?
这个数据集是基于什么背景创建的?
数据集的作者是谁?
能帮我联系到这个数据集的作者吗?
这个数据集如何下载?
点击留言
数据主题
具身智能
数据集  4099个
机构  8个
大模型
数据集  439个
机构  10个
无人机
数据集  37个
机构  6个
指令微调
数据集  36个
机构  6个
蛋白质结构
数据集  50个
机构  8个
空间智能
数据集  21个
机构  5个
5,000+
优质数据集
54 个
任务类型
进入经典数据集
热门数据集

aqcat25

<h1 align="center" style="font-size: 36px;"> <span style="color: #FFD700;">AQCat25 Dataset:</span> Unlocking spin-aware, high-fidelity machine learning potentials for heterogeneous catalysis </h1> ![datset_schematic](https://cdn-uploads.huggingface.co/production/uploads/67256b7931376d3bacb18de0/W1Orc_AmSgRez5iKH0qjC.jpeg) This repository contains the **AQCat25 dataset**. AQCat25-EV2 models can be accessed [here](https://huggingface.co/SandboxAQ/aqcat25-ev2). The AQCat25 dataset provides a large and diverse collection of **13.5 million** DFT calculation trajectories, encompassing approximately 5K materials and 47K intermediate-catalyst systems. It is designed to complement existing large-scale datasets by providing calculations at **higher fidelity** and including critical **spin-polarized** systems, which are essential for accurately modeling many industrially relevant catalysts. Please see our [website](https://www.sandboxaq.com/aqcat25) and [paper](https://cdn.prod.website-files.com/622a3cfaa89636b753810f04/68ffc1e7c907b6088573ba8c_AQCat25.pdf) for more details about the impact of the dataset and [models](https://huggingface.co/SandboxAQ/aqcat25-ev2). ## 1. AQCat25 Dataset Details This repository uses a hybrid approach, providing lightweight, queryable Parquet files for each split alongside compressed archives (`.tar.gz`) of the raw ASE database files. More details can be found below. ### Queryable Metadata (Parquet Files) A set of Parquet files provides a "table of contents" for the dataset. They can be loaded directly with the `datasets` library for fast browsing and filtering. Each file contains the following columns: | Column Name | Data Type | Description | Example | | :--- | :--- | :--- | :--- | | `frame_id` | string | **Unique ID for this dataset**. Formatted as `database_name::index`. | `data.0015.aselmdb::42` | | `adsorption_energy`| float | **Key Target**. The calculated adsorption energy in eV. | -1.542 | | `total_energy` | float | The raw total energy of the adslab system from DFT (in eV). | -567.123 | | `fmax` | float | The maximum force magnitude on any single atom in eV/Å. | 0.028 | | `is_spin_off` | boolean | `True` if the system is non-magnetic (VASP ISPIN=1). | `false` | | `mag` | float | The total magnetization of the system (µB). | 32.619 | | `slab_id` | string | Identifier for the clean slab structure. | `mp-1216478_001_2_False` | | `adsorbate` | string | SMILES or chemical formula of the adsorbate. | `*NH2N(CH3)2` | | `is_rerun` | boolean | `True` if the calculation is a continuation. | `false` | | `is_md` | boolean | `True` if the frame is from a molecular dynamics run. | `false` | | `sid` | string | The original system ID from the source data. | `vadslabboth_82` | | `fid` | integer | The original frame index (step number) from the source VASP calculation. | 0 | --- #### Understanding `frame_id` and `fid` | Field | Purpose | Example | | :--- | :--- | :--- | | `fid` | **Original Frame Index**: This is the step number from the original VASP relaxation (`ionic_steps`). It tells you where the frame came from in its source simulation. | `4` (the 5th frame of a specific VASP run) | | `frame_id` | **Unique Dataset Pointer**: This is a new ID created for this specific dataset. It tells you exactly which file (`data.0015.aselmdb`) and which row (`101`) to look in to find the full atomic structure. | `data.0015.aselmdb::101` | --- ## Downloadable Data Archives The full, raw data for each split is available for download in compressed `.tar.gz` archives. The table below provides direct download links. The queryable Parquet files for each split can be loaded directly using the `datasets` library as shown in the "Example Usage" section. The data currently available for download (totaling ~11.1M frames, as listed in the table below) is the initial dataset version (v1.0) released on September 10, 2025. The 13.5M frame count mentioned in our paper and the introduction includes additional data used to rebalance non-magnetic element systems and add a low-fidelity spin-on dataset. These new data splits will be added to this repository soon. | Split Name | Structures | Archive Size | Download Link | | :--- | :--- | :--- | :--- | | ***In-Domain (ID)*** | | | | | Train | `7,386,750` | `23.8 GB` | [`train_id.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/train_id.tar.gz) | | Validation | `254,498` | `825 MB` | [`val_id.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/val_id.tar.gz) | | Test | `260,647` | `850 MB` | [`test_id.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/test_id.tar.gz) | | Slabs | `898,530` | `2.56 GB` | [`id_slabs.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/id_slabs.tar.gz) | | ***Out-of-Distribution (OOD) Validation*** | | | | | OOD Ads (Val) | `577,368` | `1.74 GB` | [`val_ood_ads.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/val_ood_ads.tar.gz) | | OOD Materials (Val) | `317,642` | `963 MB` | [`val_ood_mat.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/val_ood_mat.tar.gz) | | OOD Both (Val) | `294,824` | `880 MB` | [`val_ood_both.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/val_ood_both.tar.gz) | | OOD Slabs (Val) | `28,971` | `83 MB` | [`val_ood_slabs.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/val_ood_slabs.tar.gz) | | ***Out-of-Distribution (OOD) Test*** | | | | | OOD Ads (Test) | `346,738` | `1.05 GB` | [`test_ood_ads.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/test_ood_ads.tar.gz) | | OOD Materials (Test) | `315,931` | `993 MB` | [`test_ood_mat.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/test_ood_mat.tar.gz) | | OOD Both (Test) | `355,504` | `1.1 GB` | [`test_ood_both.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/test_ood_both.tar.gz) | | OOD Slabs (Test) | `35,936` | `109 MB` | [`test_ood_slabs.tar.gz`](https://huggingface.co/datasets/SandboxAQ/aqcat25-dataset/resolve/main/test_ood_slabs.tar.gz) | --- ## 2. Dataset Usage Guide This guide outlines the recommended workflow for accessing and querying the AQCat25 dataset. ### 2.1 Initial Setup Before you begin, you need to install the necessary libraries and authenticate with Hugging Face. This is a one-time setup. ```bash pip install datasets pandas ase tqdm requests huggingface_hub ase-db-backends ``` **1. Create a Hugging Face Account:** If you don't have one, create an account at [huggingface.co](https://huggingface.co/join). **2. Create an Access Token:** Navigate to your **Settings -> Access Tokens** page or click [here](https://huggingface.co/settings/tokens). Create a new token with at least **`read`** permissions. Copy this token to your clipboard. **3. Log in via the Command Line:** Open your terminal and run the following command: ```bash hf auth login ``` ### 2.2 Get the Helper Scripts You may copy the scripts directly from this repository, or download them by running the following in your local python environment: ```python from huggingface_hub import snapshot_download snapshot_download( repo_id="SandboxAQ/aqcat25", repo_type="dataset", allow_patterns=["scripts/*", "README.md"], local_dir="./aqcat25" ) ``` This will create a local folder named aqcat25 containing the scripts/ directory. ### 2.3 Download Desired Dataset Splits Data splits may be downloaded directly via the Hugging Face UI, or via the `download_split.py` script (found in `aqcat25/scripts/`). ```bash python aqcat25/scripts/download_split.py --split val_id ``` This will download `val_id.tar.gz` and extract it to a new folder named `aqcat_data/val_id/`. ### 2.4 Query the Dataset Use the `query_aqcat.py` script to filter the dataset and extract the specific atomic structures you need. It first queries the metadata on the Hub and then extracts the full structures from your locally downloaded files. **Example 1: Find all CO and OH structures in the test set:** ```bash python aqcat25/scripts/query_aqcat.py \ --split test_id \ --adsorbates "*CO" "*OH" \ --data-root ./aqcat_data/test_id ``` **Example 2: Find structures on metal slabs with low adsorption energy:** ```bash python aqcat25/scripts/query_aqcat.py \ --split val_ood_both \ --max-energy -2.0 \ --material-type nonmetal \ --magnetism magnetic \ --data-root ./aqcat_data/val_ood_both \ --output-file low_energy_metals.extxyz ``` **Example 3: Find CO on slabs containing both Ni AND Se with adsorption energy between -2.5 and -1.5 eV with a miller index of 011** ```bash python aqcat25/scripts/query_aqcat.py \ --split val_ood_ads \ --adsorbates "*COCH2OH" \ --min-energy -2.5 \ --max-energy -1.5 \ --contains-elements "Ni" "Se" \ --element-filter-mode all \ --facet 011 \ --data-root ./aqcat_data/val_ood_ads \ --output-file COCH2OH_on_ni_and_se.extxyz ``` --- ## 3. How to Cite If you use the AQCat25 dataset or the models in your research, please cite the following paper: ``` Omar Allam, Brook Wander, & Aayush R. Singh. (2025). AQCat25: Unlocking spin-aware, high-fidelity machine learning potentials for heterogeneous catalysis. arXiv preprint arXiv:XXXX.XXXXX. ``` ### BibTeX Entry ```bibtex @article{allam2025aqcat25, title={{AQCat25: Unlocking spin-aware, high-fidelity machine learning potentials for heterogeneous catalysis}}, author={Allam, Omar and Wander, Brook and Singh, Aayush R}, journal={arXiv preprint arXiv:2510.22938}, year={2025}, eprint={2510.22938}, archivePrefix={arXiv}, primaryClass={cond-mat.mtrl-sci} } ```

魔搭社区 收录

Empathizing-Systemizing Test Responses

Open sourced raw data from Openpsychometrics.org

kaggle 收录

emotions-dataset

情绪数据集是一个精心策划的文本数据集,包含131,306个文本条目,标注了13种不同的情绪,如快乐、悲伤、中性、愤怒等。该数据集旨在提升情感分类、情感分析和自然语言处理的能力,适用于构建富有同情心的聊天机器人、心理健康工具、社交媒体分析器等。数据集文件大小为7.41MB,便于在边缘设备和大型项目中使用。

huggingface 收录

ERIC (Education Resources Information Center)

ERIC (Education Resources Information Center) 是一个广泛的教育文献数据库,包含超过130万条记录,涵盖从1966年至今的教育研究、政策和实践。数据集内容包括教育相关的期刊文章、书籍、研究报告、会议论文、技术报告、政策文件等。

eric.ed.gov 收录

Beijing Traffic

The Beijing Traffic Dataset collects traffic speeds at 5-minute granularity for 3126 roadway segments in Beijing between 2022/05/12 and 2022/07/25.

Papers with Code 收录