Genic SNPs associated with different traits.

For nonsynonymous SNPs, the amino acid change and the Grantham score (ranging from 0 to 215), which measures the physico-chemical properties of the amino acids, are reported. All SNPs in the table were significant (p < 0.05) after raw p-values were corrected by an empirical p-value distribution from a permutation procedure. * highlights those that also passed a double Bonferroni threshold, correcting by number of SNPs and number of phenotypes (p < 0.0001). LD corresponds to how many other SNP hits are in high linkage (r2>0.5). S5 Table contains information on all significant SNPs and S4 Table for details on phenotypes and climatic variables.