Nanopore and Illumina sequencing of chloroplast genomes from two Leucanthemum species

The Leucanthemum vulgare plastome was enriched by long-range PCR and subsequently sequenced and assembled using different types of sequencing (Illumina, Nanopore) and assembly methods (de-novo assembly, hybrid assembly, reference-based assembly) to evaluate the quality of plastome sequences derived from Nanopore-only sequencing compared to Illumina-based plastome sequences. Additionally, the Leucanthemum virgatum plastome was sequenced using de novo assembly of Illumina data.