Assembly and annotation of the A. vaga L1 genome

This dataset includes:<br>1) Diploid genome assembly generated for the <i>A. vaga</i> L1 genome with SPAdes (version 3.6.0) from MiSeq reads (file 'Adineta.vaga.L1.contigs.fasta'). <br>2) Haploid sub-assembly of the <i>A. vaga</i> L1 genome (file 'Adineta.vaga.L1.haploid.segments.fasta'). This is haploid representation of the L1 genome containing mostly non-redundant genomic segments extracted from the L1 diploid contigs. <br>3) Annotation of protein-coding genes produced for the <i>A. vaga</i> L1 diploid contigs in the GTF format (78,303 gene models from 75,877 loci; file 'Adineta.vaga.L1.contigs.annotation.gtf').<br>4) List of gene models from the filtered gene set (file 'Adineta.vaga.L1.contigs.annotation.transcripts.filtered.txt'). This set includes 61,531 gene models retained after filtering aimed at removing pseudogenes and putative annotation errors. For loci with more than one gene model, the longest one is included.<br>5) Coordinates of gene models transferred to the haploid sub-assembly (file 'Adineta.vaga.L1.haploid.segments.transcripts.gtf') in the GTF format (only transcript and CDS feature types are included). Only those gene models that were fully contained within the haploid segments are retained (n = 23,802).