遇见数据集

Aligned DNA sequence matrix for phylogenetic analyses in the article "Three new species of frogs of the genus Pristimantis (Anura: Strabomantidae) with a redefinition of the P. lacrimosus species group"

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Mendeley Data2024-03-27 更新2024-06-27 收录
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Aligned DNA sequence matrix for phylogenetic analyses of the article "Three new species of frogs of the genus Pristimantis (Anura: Strabomantidae) with a redefinition of the P. lacrimosus species group". The matrix is in NEXUS format. Gene partitions are arranged as follows (tRNAs are included as part of larger adjacent genes): RAG1 codon position 1 = 1-625\3; RAG1 codon position 2 = 2-626\3; RAG1 codon position 3 = 3-627\3; 12S rRNA = 628-1440; 16S rRNA = 1441-3071; ND1 codon position 1 = 3072-3972\3; ND1 codon position 2 = 3073-3973\3; ND1 codon position 3 = 3074-3974\3;

本数据集为论文《Pristimantis属(无尾目:暴蛙科)三新种及P. lacrimosus物种类群重新界定》的系统发育分析所用的比对DNA序列矩阵,文件格式为NEXUS格式。基因分区排布规则如下(转运RNA(tRNA)被归入相邻的更大基因范畴内):RAG1基因密码子第1位点对应序列区间1–625,每3个碱基为一组取第1位碱基;RAG1基因密码子第2位点对应序列区间2–626,每3个碱基为一组取第2位碱基;RAG1基因密码子第3位点对应序列区间3–627,每3个碱基为一组取第3位碱基;12S核糖体RNA(12S rRNA)对应序列区间628–1440;16S核糖体RNA(16S rRNA)对应序列区间1441–3071;ND1基因密码子第1位点对应序列区间3072–3972,每3个碱基为一组取第1位碱基;ND1基因密码子第2位点对应序列区间3073–3973,每3个碱基为一组取第2位碱基;ND1基因密码子第3位点对应序列区间3074–3974,每3个碱基为一组取第3位碱基。

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2023-06-28
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