EasyFuse detected fusion gene candidates

This dataset contains supplementary data tables with predicted gene fusion candidates from the EasyFuse publication Weber et al. 2022<br><br><br>File 1: Fusion genes detected in MCF7 and SKBR3 cell lines.<br>Presented are fusion genes detected in MCF7 and SKBR3 sequencing samples: Each breakpoint pair combined with the overlapping gene names and reading strands in reading direction represents a prediction as indicated in column “FGID”, as well separately in the columns “BPID, “Fusion_Gene”, “Breakpoint1” and “Breakpoint2”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads”. The “Sample” column indicates the cell line and the column “Tool” the reporting tool. The column “Prediction_File” contains information on the sequencing replicate used for prediction.<br><br>File 2: Fusion genes detected in FF tumor tissue<br>Fusion genes detected in 14 FF breast cancer samples. Each breakpoint pair combined with the overlapping gene names and reading strands in reading direction represents a prediction as indicated in column “FGID”, as well separately in the columns “BPID”, “Fusion_Gene”, “Breakpoint1” and “Breakpoint2”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads”. The “Sample” column indicates the cell line and the column “Tool” the reporting tool. The column “Prediction_File” contains information on the sequencing replicate used for prediction.<br><br>File 3: Fusion genes detected in FF normal tissue<br>Fusion genes detected in 143 normal tissue samples derived from 49 different tissue sites. Each detected breakpoint pair combined with reading strands represents a prediction as indicated in column “BPID”. Genomic coordinates refer to human reference genome hg38. Junction reads and spanning pairs reported by the detection tools are presented in column “Junction_Reads” and “Spanning_Reads” and the reporting tool in column “Tool”. The “Sample” column indicates the sample ID with the tissue site given in “Tissue”.<br><br>File 4: EasyFuse predicted fusion genes in FF tumor tissue<br>EasyFuse output of predicted candidate fusion genes in 57 breast cancer samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the methods.<br><br>File 5: EasyFuse detected fusion genes in FFPE tumor tissue<br>EasyFuse output of predicted candidate fusion genes in 14 FFPE tumor samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the methods.<br><br><br>File 6: EasyFuse detected fusion genes in the immunogenicity cohort<br>EasyFuse output of predicted candidate fusion genes in 14 FFPE tumor samples. For a detailed description of the columns, please refer to the description of the EasyFuse output format in the Methods.<br><br>