A total of 1,767 unique SNPs and 485 indels were detected in the collection of 39 isolates.

For each of the 1,767 unique SNPs (A) and 485 indels (B), the tables indicate the nucleotide (nt) position and gene ID according to the reference (J99, AE001439). Unique events are labeled as either coding or intergenic. SNPs within coding regions are further subdivided into nonsynonymous or synonymous categories. The presence or absence of each polymorphism across each individual isolate is designated as present (1) or absent (0) along with the total number of isolates with the polymorphism (n).
(XLSX)