A IBD map was constructed of contributions from the twenty-four founders onto the 1,404 progeny lines using a hidden Markov model (HMM) with several modifications on the study of Mott et al., (2000).
A IBD map was constructed of contributions from the twenty-four founders onto the 1,404 progeny lines using a hidden Markov model (HMM) with several modifications on the study of Mott et al., (2000).
This code runs a simulation of the bottleneck and subsequent pedigree used for the N=10 x1 population. Variance in individual IBD generated during the bottleneck retained through the pedigree. This me