Additional file 1 of Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees

Additional file 1: Fig. S1. Correlation matrix plot of data obtained from five platforms; GC–MS, LC–MS, Py–GC/MS, Proteomics, and Transcriptomics. Table S1. Monosaccharide composition of wood from wild-type (WT) and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S2. Relative abundance of metabolites identified by Pyrolysis–GC/MS analysis of wild-type and transgenic PttVAP27-17 overexpression lines grown in the greenhouse. Table S3. LC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S4. GC–MS metabolomic analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S5. RNAseq analysis of wild-type and PttVAP27-17 overexpression lines of greenhouse-grown trees. Table S6. List of all peptides identified in the proteomic study. Table S7. List of all proteins identified in the proteomic study. Table S8. Genes co-expressed with PttVAP27-17. Table S9. Gene ontology (GO) analysis of transcripts (using tool REVIGO from Popgenie homepage popgenie.org) with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S10. Gene ontology (GO) analysis of all proteins with statistically significant changes in the PttVAP27-17 overexpressing transgenic lines compared to the wild type of greenhouse-grown trees. Table S11. (a) Overexpression of PttVAP27-17 affects sugar yields of greenhouse-grown trees. (b) Overexpression of PttVAP27-17 affects sugar yields of field-grown trees.