HG002 Supernova and Canu - Hybrid Assembly

Example data for creating a hybrid assembly from a supernova (10X Genomics linked reads) and canu (PacBio CLR long reads). Reads used to generate these assemblies were sourced from the Genome In A Bottle dataset for HG002. Pipeline details can be found here. Assembly files with haplotigs have been removed using purge_dups: HG002_canu.contigs.purged.fa.gz HG002_canu.unitigs.clean.bed (unitigs from canu) HG002_supernova.pseudohap.purged.fa.gz 1 kb BLASTn alignments of supernova against canu: HG002.blastn.summary.txt Hybrid assembly: HG002_hybrid.assembly.fa.gz (main scaffolds) HG002_hybrid.assembly.leftover.fa.gz (unplaced scaffolds) HG002_hybrid.source.bed (source assembly) HG002_hybrid.source_leftover.bed (source assembly) HG002_hybrid.scaff.t2t.txt (best chromosome match against T2T)