raisd-ai_evaluation_dataset_low_intensity_recombination_hotspot_merge_2K
收藏DataCite Commons2025-02-18 更新2025-05-07 收录
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https://figshare.com/articles/dataset/raisd-ai_evaluation_dataset_low_intensity_recombination_hotspot_merge_2K/28436030
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Dataset of low intensity recombination hotspot (1000 simulations) merged with a mild bottleneck (1000 simulations) used for the evaluation of RAiSD-AI software.The commands to generate recombination hotspot MS files are:train/neutral.ms: ./msHOT/msHOT 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 1 -v 1 950 1050 224911 5763 23421train/selsweep.ms: command: ./../mbs/mbs 128 -t 0.02 -r 0.02 -s 100000 50000 -f 1 1000 ./../mbsFiles/traj -h ./../mbsFiles/rechot_47500_52500_2.txttest/neutral.ms: ./msHOT/msHOT 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 1 -v 1 950 1050 247112 3587 13815test/selsweep.ms: command: ./mbs/mbs 128 -t 0.02 -r 0.02 -s 100000 50000 -f 1 1000 ./mbsFiles/traj -h ./mbsFiles/rechot_47500_52500_2.txtThe commands to generate mild bottleneck MS files are:train/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 17316 60926 22395train/selsweep.ms: ./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory1.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 17316 60926 22395test/neutral.ms: ./msdir/ms 128 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 13380 19597 12002test/selsweep.ms: ./msseldir/mssel 128 1000 0 128 ./trajectory_files/trajectory1.txt 1000 -t 2000 -r 2000 2000 -eN .10000000000000000000 0.5 -eN .10040000000000000000 13380 19597 12002<br>
提供机构：
figshare
创建时间：
2025-02-18
